If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 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'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ), 'gf_id' => 'HOM05D000658', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000658' ), 'data_identifier' => 'HOM05D000658', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000658', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '864', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p09520' => 'bna', 'A01p14890' => 'bna', 'A01p14900' => 'bna', 'A02p10650' => 'bna', 'A03p12510' => 'bna', 'A03p27000' => 'bna', 'A03p54540' => 'bna', 'A03p54560' => 'bna', 'A03p54570' => 'bna', 'A03p58070' => 'bna', 'A03p58080' => 'bna', 'A05p16410' => 'bna', 'A07p00130' => 'bna', 'A08p16210' => 'bna', 'A09p12570' => 'bna', 'A09p27610' => 'bna', 'A09p53560' => 'bna', 'A09p56000' => 'bna', 'A09p56070' => 'bna', 'A09p58800' => 'bna', 'Aa31LG3G13690' => 'aar', 'Aa31LG3G9990' => 'aar', 'Aa31LG6G6820' => 'aar', 'Aa31LG7G12600' => 'aar', 'Aa31LG7G12610' => 'aar', 'Aa31LG8G17510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5306' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.672' => 'aag', 'Actinidia07059' => 'ach', 'Actinidia11009' => 'ach', 'Actinidia11010' => 'ach', 'Actinidia11097' => 'ach', 'Actinidia13316' => 'ach', 'Actinidia18777' => 'ach', 'Actinidia30459' => 'ach', 'Actinidia37234' => 'ach', 'Actinidia39324' => 'ach', 'Ah.01g015380' => 'amhyb', 'Ah.01g015390' => 'amhyb', 'Ah.06g184710' => 'amhyb', 'Ah.12g055470' => 'amhyb', 'AL4G15900' => 'aly', 'AL4G15910' => 'aly', 'AL7G24150' => 'aly', 'AL7G24160' => 'aly', 'AL7G29770' => 'aly', 'AL7G29780' => 'aly', 'AL7G45110' => 'aly', 'AL8G29110' => 'aly', 'AL8G33900' => 'aly', 'Aqoxy1G02322' => 'aox', 'Aqoxy4G00687' => 'aox', 'Aqoxy4G00688' => 'aox', 'Aqoxy4G00689' => 'aox', 'Aqoxy7G03816' => 'aox', 'Aqoxy7G03833' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C9IB2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BK6NKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8FBNK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DLM7XC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E72ZC6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0AHUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HZ04KR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J1Z9L2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L5LHX1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NKCT11' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8E3V6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QYLY8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPED9V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJD9KW' => 'arhy', 'AT2G20610' => 'ath', 'AT2G24850' => 'ath', 'AT4G23590' => 'ath', 'AT4G23600' => 'ath', 'AT4G28410' => 'ath', 'AT4G28420' => 'ath', 'AT5G36160' => 'ath', 'AT5G53970' => 'ath', 'AT5G57850' => 'ath', 'ATR0054G001' => 'atr', 'ATR0054G003' => 'atr', 'ATR0104G001' => 'atr', 'ATR0315G028' => 'atr', 'ATR0474G001' => 'atr', 'ATR0730G192' => 'atr', 'ATR0730G193' => 'atr', 'Atru.chr2.1990' => 'acertr', 'Atru.chr2.2401' => 'acertr', 'Atru.chr2.2402' => 'acertr', 'Atru.chr3.2834' => 'acertr', 'Atru.chr5.2860' => 'acertr', 'Atru.chr6.2880' => 'acertr', 'Atru.chr6.2882' => 'acertr', 'Atru.chr6.2883' => 'acertr', 'Atru.chr6.2942' => 'acertr', 'Atru.chr6.2944' => 'acertr', 'Atru.chr7.2147' => 'acertr', 'Atru.chr8.1071' => 'acertr', 'AUR62007350' => 'cqu', 'AUR62009314' => 'cqu', 'AUR62018644' => 'cqu', 'AUR62019479' => 'cqu', 'AUR62019481' => 'cqu', 'AUR62029667' => 'cqu', 'AUR62036043' => 'cqu', 'AUR62036044' => 'cqu', 'AUR62036153' => 'cqu', 'AUR62036156' => 'cqu', 'AUR62038977' => 'cqu', 'AUR62043495' => 'cqu', 'AUR62043615' => 'cqu', 'BcaB01g03001' => 'bca', 'BcaB01g04492' => 'bca', 'BcaB02g08042' => 'bca', 'BcaB03g11767' => 'bca', 'BcaB03g11768' => 'bca', 'BcaB03g11769' => 'bca', 'BcaB03g16857' => 'bca', 'BcaB05g22097' => 'bca', 'BcaB06g27973' => 'bca', 'BcaB08g34862' => 'bca', 'BcaB08g34922' => 'bca', 'BcaB08g34929' => 'bca', 'BcaB08g35124' => 'bca', 'BcaB08g35377' => 'bca', 'BcaC01g00822' => 'bca', 'BcaC01g00823' => 'bca', 'BcaC01g00824' => 'bca', 'BcaC01g00825' => 'bca', 'BcaC03g14359' => 'bca', 'BcaC04g22825' => 'bca', 'BcaC06g32623' => 'bca', 'BcaC06g33067' => 'bca', 'BcaC06g33331' => 'bca', 'BcaC06g35161' => 'bca', 'BcaC06g36753' => 'bca', 'BcaC07g40901' => 'bca', 'BcaC07g41203' => 'bca', 'BcaC08g44320' => 'bca', 'BcaC09g50972' => 'bca', 'BcaC09g51643' => 'bca', 'BcaNung01068' => 'bca', 'BcaNung01568' => 'bca', 'BcaNung03178' => 'bca', 'BcaNung03444' => 'bca', 'BcaNung03445' => 'bca', 'BcaNung03446' => 'bca', 'BcaNung03447' => 'bca', 'BolC1t01069H' => 'bol', 'BolC1t01073H' => 'bol', 'BolC1t01785H' => 'bol', 'BolC2t07905H' => 'bol', 'BolC3t13914H' => 'bol', 'BolC3t15581H' => 'bol', 'BolC3t20764H' => 'bol', 'BolC3t20765H' => 'bol', 'BolC3t20766H' => 'bol', 'BolC3t20769H' => 'bol', 'BolC3t20771H' => 'bol', 'BolC3t20772H' => 'bol', 'BolC3t20776H' => 'bol', 'BolC6t36938H' => 'bol', 'BolC7t40482H' => 'bol', 'BolC7t40484H' => 'bol', 'BolC7t40486H' => 'bol', 'BolC7t45788H' => 'bol', 'BolC7t45790H' => 'bol', 'BolC7t45791H' => 'bol', 'BolC7t46095H' => 'bol', 'BolC7t46097H' => 'bol', 'BolC8t51473H' => 'bol', 'BolC8t51772H' => 'bol', 'BolC9t54392H' => 'bol', 'BraA01t00894Z' => 'bra', 'BraA01t00895Z' => 'bra', 'BraA01t01430Z' => 'bra', 'BraA01t01431Z' => 'bra', 'BraA02t06129Z' => 'bra', 'BraA03t10567Z' => 'bra', 'BraA03t11911Z' => 'bra', 'BraA03t14518Z' => 'bra', 'BraA03t14522Z' => 'bra', 'BraA03t14524Z' => 'bra', 'BraA03t14872Z' => 'bra', 'BraA03t14874Z' => 'bra', 'BraA04t16674Z' => 'bra', 'BraA05t20548Z' => 'bra', 'BraA07t27807Z' => 'bra', 'BraA08t33591Z' => 'bra', 'BraA09t36904Z' => 'bra', 'BraA09t40780Z' => 'bra', 'BraA09t41002Z' => 'bra', 'BraA09t41266Z' => 'bra', 'C01p11070' => 'bna', 'C01p11080' => 'bna', 'C01p18580' => 'bna', 'C02p17750' => 'bna', 'C03p14720' => 'bna', 'C03p32400' => 'bna', 'C03p84760' => 'bna', 'C03p84770' => 'bna', 'C03p84780' => 'bna', 'C03p84800' => 'bna', 'C03p84810' => 'bna', 'C03p84820' => 'bna', 'C06p17430' => 'bna', 'C07p00330' => 'bna', 'C07p00350' => 'bna', 'C07p00370' => 'bna', 'C07p52900' => 'bna', 'C07p52910' => 'bna', 'C07p52920' => 'bna', 'C07p56180' => 'bna', 'C07p56200' => 'bna', 'C08p38990' => 'bna', 'C08p42120' => 'bna', 'C09p14920' => 'bna', 'CAN.G1104.2' => 'can', 'CAN.G1104.3' => 'can', 'CAN.G1104.4' => 'can', 'CAN.G1110.2' => 'can', 'CAN.G1119.18' => 'can', 'CAN.G1330.45' => 'can', 'CAN.G1330.46' => 'can', 'CAN.G162.33' => 'can', 'CAN.G209.17' => 'can', 'CAN.G209.18' => 'can', 'CAN.G209.19' => 'can', 'CAN.G209.20' => 'can', 'CAN.G209.21' => 'can', 'CAN.G309.84' => 'can', 'CAN.G374.5' => 'can', 'CAN.G632.1' => 'can', 'CAN.G782.29' => 'can', 'CAN.G947.22' => 'can', 'CANSAT25G2221' => 'cansat', 'CANSAT35G0223' => 'cansat', 'CANSAT35G0724' => 'cansat', 'CANSAT35G1277' => 'cansat', 'CANSAT64G1113' => 'cansat', 'CANSAT64G1730' => 'cansat', 'CANSAT64G1780' => 'cansat', 'CARHR111180' => 'chi', 'CARHR111240' => 'chi', 'CARHR116810' => 'chi', 'CARHR216580' => 'chi', 'CARHR230960' => 'chi', 'CARHR230970' => 'chi', 'CARHR236180' => 'chi', 'CARHR236190' => 'chi', 'CARHR267100' => 'chi', 'CARHR271590' => 'chi', 'Carub.0003s3514' => 'cru', 'Carub.0007s1228' => 'cru', 'Carub.0007s1229' => 'cru', 'Carub.0007s1754' => 'cru', 'Carub.0007s1756' => 'cru', 'Carub.0007s1757' => 'cru', 'Carub.0007s3183' => 'cru', 'Carub.0008s1427' => 'cru', 'Carub.0008s1838' => 'cru', 'Ca_03526_v3' => 'car', 'Ca_07347_v3' => 'car', 'Ca_09439_v3' => 'car', 'Ca_12732_v3' => 'car', 'Ca_12738_v3' => 'car', 'Ca_29239_v3' => 'car', 'Ca_29607_v3' => 'car', 'CBR_g18754' => 'cbr', 'CBR_g38626' => 'cbr', 'CBR_g41167' => 'cbr', 'Cc01_g06120' => 'ccan', 'Cc05_g07600' => 'ccan', 'Cc05_g07610' => 'ccan', 'Cc05_g11700' => 'ccan', 'Cc05_g11710' => 'ccan', 'Cc08_g09120' => 'ccan', 'CDE02G1205' => 'cde', 'CDE02G2334' => 'cde', 'CDE08G0517' => 'cde', 'CDE08G1153' => 'cde', 'CDE10G0272' => 'cde', 'CDE10G0388' => 'cde', 'CDE10G0603' => 'cde', 'CDE10G1327' => 'cde', 'Cfa010336' => 'cfa', 'Cfa014649' => 'cfa', 'Cfa014650' => 'cfa', 'Cfa014651' => 'cfa', 'Cfa020608' => 'cfa', 'Ciclev10008448m.g' => 'ccl', 'Ciclev10008593m.g' => 'ccl', 'Ciclev10008846m.g' => 'ccl', 'Ciclev10015280m.g' => 'ccl', 'Ciclev10015303m.g' => 'ccl', 'Ciclev10015356m.g' => 'ccl', 'Ciclev10015358m.g' => 'ccl', 'Ciclev10015371m.g' => 'ccl', 'Ciclev10017643m.g' => 'ccl', 'CiPaw.04G127800' => 'cil', 'CiPaw.04G127900' => 'cil', 'CiPaw.04G128000' => 'cil', 'CiPaw.04G128200' => 'cil', 'CiPaw.04G128400' => 'cil', 'CiPaw.07G206200' => 'cil', 'CiPaw.11G167400' => 'cil', 'CiPaw.11G167500' => 'cil', 'ClCG02G017780' => 'cla', 'ClCG11G015250' => 'cla', 'ClCG11G017770' => 'cla', 'ClCG11G017780' => 'cla', 'COL.COLO4_18018' => 'col', 'COL.COLO4_18019' => 'col', 'COL.COLO4_18054' => 'col', 'COL.COLO4_18056' => 'col', 'COL.COLO4_18057' => 'col', 'COL.COLO4_18684' => 'col', 'Cpa.g.sc131.89' => 'cpa', 'Cpa.g.sc131.90' => 'cpa', 'Cpa.g.sc48.18' => 'cpa', 'Cpa.g.sc83.81' => 'cpa', 'Cpa.g.sc83.83' => 'cpa', 'Cre13.g576400' => 'cre', 'CsaV3_3G048670' => 'csa', 'CsaV3_4G033410' => 'csa', 'CsaV3_4G033420' => 'csa', 'CsaV3_6G015190' => 'csa', 'CSS0000137' => 'camsi', 'CSS0008220' => 'camsi', 'CSS0013296' => 'camsi', 'CSS0014291' => 'camsi', 'CSS0016501' => 'camsi', 'CSS0023036' => 'camsi', 'CSS0028146' => 'camsi', 'CSS0029092' => 'camsi', 'CSS0037406' => 'camsi', 'CSS0042615' => 'camsi', 'CSS0045477' => 'camsi', 'DCAR_000587' => 'dca', 'DCAR_013030' => 'dca', 'DCAR_013125' => 'dca', 'DCAR_017122' => 'dca', 'DCAR_021258' => 'dca', 'Dinv06867' => 'din', 'Dinv06868' => 'din', 'Dinv06869' => 'din', 'Dinv10159' => 'din', 'Dinv10161' => 'din', 'Dinv14238' => 'din', 'Dinv14940' => 'din', 'Dinv14941' => 'din', 'Dinv20206' => 'din', 'Dinv30263' => 'din', 'Duzib052G0537' => 'dzi', 'Duzib052G0875' => 'dzi', 'Duzib052G1179' => 'dzi', 'Duzib052G1251' => 'dzi', 'Duzib168G1840' => 'dzi', 'Duzib187G1940' => 'dzi', 'Duzib213G0107' => 'dzi', 'Duzib213G0289' => 'dzi', 'ECA233G1495' => 'eca', 'ECA233G1765' => 'eca', 'ECA233G1890' => 'eca', 'ECA233G3461' => 'eca', 'ECA233G6171' => 'eca', 'ECA234G0435' => 'eca', 'ECA234G4355' => 'eca', 'ECA236G3192' => 'eca', 'ECA240G3050' => 'eca', 'ECA246G1163' => 'eca', 'ECA246G2466' => 'eca', 'ECA246G5343' => 'eca', 'EL10Ac2g04056' => 'bvu', 'EL10Ac4g08249' => 'bvu', 'EL10Ac5g12016' => 'bvu', 'EL10Ac9g20805' => 'bvu', 'EL10Ac9g20806' => 'bvu', 'Eucgr.A01840' => 'egr', 'Eucgr.A01845' => 'egr', 'Eucgr.A01848' => 'egr', 'Eucgr.A01853' => 'egr', 'Eucgr.C02899' => 'egr', 'Eucgr.F01171' => 'egr', 'Eucgr.F01172' => 'egr', 'FAN02G2797' => 'fan', 'FAN02G3520' => 'fan', 'FAN05G1185' => 'fan', 'FAN05G2061' => 'fan', 'FAN05G5518' => 'fan', 'FAN09G0523' => 'fan', 'FAN09G2633' => 'fan', 'FAN11G0086' => 'fan', 'FAN11G3869' => 'fan', 'FAN14G0899' => 'fan', 'FAN14G4433' => 'fan', 'FAN15G2124' => 'fan', 'FAN16G0792' => 'fan', 'FAN16G2013' => 'fan', 'FAN16G2016' => 'fan', 'FAN20G1586' => 'fan', 'FAN21G0951' => 'fan', 'FAN25G1565' => 'fan', 'FAN25G2716' => 'fan', 'FAN27G1369' => 'fan', 'FvH4_2g35980' => 'fve', 'FvH4_3g19330' => 'fve', 'FvH4_3g19340' => 'fve', 'FvH4_6g26600' => 'fve', 'FvH4_6g26610' => 'fve', 'Glyma.04G081001' => 'gma', 'Glyma.06G082700' => 'gma', 'Glyma.06G235500' => 'gma', 'Glyma.06G235900' => 'gma', 'Glyma.12G161500' => 'gma', 'Glyma.12G205900' => 'gma', 'Glyma.12G226400' => 'gma', 'Glyma.13G274402' => 'gma', 'Glyma.13G294901' => 'gma', 'Glyma.13G295000' => 'gma', 'Glyma.17G190800' => 'gma', 'Gohir.A03G155100' => 'ghi', 'Gohir.A03G155200' => 'ghi', 'Gohir.A04G036300' => 'ghi', 'Gohir.A06G094900' => 'ghi', 'Gohir.A13G055400' => 'ghi', 'Gohir.A13G147200' => 'ghi', 'Gohir.D02G178100' => 'ghi', 'Gohir.D02G178150' => 'ghi', 'Gohir.D02G178200' => 'ghi', 'Gohir.D02G178301' => 'ghi', 'Gohir.D05G347100' => 'ghi', 'Gohir.D06G094400' => 'ghi', 'Gohir.D13G066700' => 'ghi', 'Gohir.D13G152212' => 'ghi', 'Gorai.005G199900' => 'gra', 'Gorai.005G200000' => 'gra', 'Gorai.005G200100' => 'gra', 'Gorai.009G375000' => 'gra', 'Gorai.010G108900' => 'gra', 'Gorai.013G075900' => 'gra', 'Gorai.013G171600' => 'gra', 'GSVIVG01014284001' => 'vvi', 'GSVIVG01014286001' => 'vvi', 'GSVIVG01020585001' => 'vvi', 'GSVIVG01020586001' => 'vvi', 'GSVIVG01020588001' => 'vvi', 'GSVIVG01020592001' => 'vvi', 'GSVIVG01020594001' => 'vvi', 'GSVIVG01030354001' => 'vvi', 'GSVIVG01031641001' => 'vvi', 'GSVIVG01034586001' => 'vvi', 'GSVIVG01035658001' => 'vvi', 'GSVIVG01036625001' => 'vvi', 'GSVIVG01037147001' => 'vvi', 'HanXRQChr03g0070591' => 'han', 'HanXRQChr04g0105871' => 'han', 'HanXRQChr10g0302531' => 'han', 'HanXRQChr11g0339351' => 'han', 'HanXRQChr13g0389261' => 'han', 'HanXRQChr13g0389501' => 'han', 'HanXRQChr17g0541721' => 'han', 'HanXRQChr17g0554521' => 'han', 'HanXRQChr17g0554571' => 'han', 'HanXRQChr17g0555781' => 'han', 'Haze_09406' => 'cav', 'Haze_09407' => 'cav', 'Haze_13219' => 'cav', 'Haze_13220' => 'cav', 'Haze_13222' => 'cav', 'Haze_13223' => 'cav', 'Haze_13226' => 'cav', 'Haze_21867' => 'cav', 'Haze_27719' => 'cav', 'Hma1.2p1_0313F.1_g121730' => 'hma', 'Hma1.2p1_0625F.1_g191510' => 'hma', 'Hma1.2p1_2102F.1_g314070' => 'hma', 'Hma1.2p1_2786F.1_g328505' => 'hma', 'HPP92_000523' => 'vpl', 'HPP92_002927' => 'vpl', 'HPP92_003878' => 'vpl', 'HPP92_003879' => 'vpl', 'HPP92_003880' => 'vpl', 'HPP92_003884' => 'vpl', 'HPP92_003885' => 'vpl', 'HPP92_003886' => 'vpl', 'HPP92_008324' => 'vpl', 'HPP92_026198' => 'vpl', 'HPP92_028635' => 'vpl', 'Hund01042' => 'sun', 'Hund01043' => 'sun', 'Hund02238' => 'sun', 'Hund03413' => 'sun', 'Hund11184' => 'sun', 'Hund28712' => 'sun', 'Hund28713' => 'sun', 'Hund30299' => 'sun', 'Hund30307' => 'sun', 'Lalb_Chr01g0005131' => 'lal', 'Lalb_Chr01g0006631' => 'lal', 'Lalb_Chr14g0362451' => 'lal', 'Lalb_Chr14g0367091' => 'lal', 'Lalb_Chr19g0134041' => 'lal', 'Lj1C712T2' => 'lonja', 'Lj1C838T10' => 'lonja', 'Lj1g0008678' => 'lja', 'Lj1g0015589' => 'lja', 'Lj1g0017111' => 'lja', 'Lj3g0018065' => 'lja', 'Lj3g0019001' => 'lja', 'Lj3g0024569' => 'lja', 'Lj3g0024640' => 'lja', 'Lj3g0024753' => 'lja', 'Lj7A705T36' => 'lonja', 'Lj8A152T82' => 'lonja', 'Lj8C108G16' => 'lonja', 'Lj8C108T17' => 'lonja', 'Lsat_1_v5_gn_3_38780' => 'lsa', 'Lsat_1_v5_gn_4_115280' => 'lsa', 'Lsat_1_v5_gn_5_127621' => 'lsa', 'Lsat_1_v5_gn_5_33400' => 'lsa', 'Lsat_1_v5_gn_7_103600' => 'lsa', 'Lsat_1_v5_gn_8_133781' => 'lsa', 'Lsat_1_v5_gn_8_133901' => 'lsa', 'Lsat_1_v5_gn_8_133941' => 'lsa', 'Lsat_1_v5_gn_8_134021' => 'lsa', 'Lsat_1_v5_gn_8_134041' => 'lsa', 'Lsat_1_v5_gn_8_134061' => 'lsa', 'Lsat_1_v5_gn_8_137421' => 'lsa', 'Lsat_1_v5_gn_9_120820' => 'lsa', 'Lsat_1_v5_gn_9_98681' => 'lsa', 'Manes.03G061400' => 'mes', 'Manes.03G061500' => 'mes', 'Manes.03G105500' => 'mes', 'Manes.04G087200' => 'mes', 'Manes.12G089300' => 'mes', 'Manes.13G143400' => 'mes', 'Manes.15G089728' => 'mes', 'Manes.15G089756' => 'mes', 'Manes.15G089900' => 'mes', 'Mapoly0024s0033' => 'mpo', 'Mapoly0117s0033' => 'mpo', 'Mapoly0141s0025' => 'mpo', 'MBI04_g19174_MAGBIO' => 'mbi', 'MBI06_g06468_MAGBIO' => 'mbi', 'MBI06_g06469_MAGBIO' => 'mbi', 'MBI07_g32663_MAGBIO' => 'mbi', 'MBI07_g39751_MAGBIO' => 'mbi', 'MCO01G592' => 'mco', 'MCO12G414' => 'mco', 'MD03G1234800' => 'mdo', 'MD03G1234900' => 'mdo', 'MD11G1255300' => 'mdo', 'MD11G1255500' => 'mdo', 'MD15G1096500' => 'mdo', 'MD17G1234900' => 'mdo', 'MD17G1235000' => 'mdo', 'Medtr1g026860' => 'mtr', 'Medtr2g078730' => 'mtr', 'Medtr2g090615' => 'mtr', 'Medtr8g061360' => 'mtr', 'MELO3C003454.2' => 'cme', 'MELO3C013583.2' => 'cme', 'MELO3C025613.2' => 'cme', 'MELO3C025614.2' => 'cme', 'MELO3C035046.2' => 'cme', 'Migut.A00228' => 'egut', 'Migut.H01961' => 'egut', 'Migut.M00158' => 'egut', 'Migut.M00778' => 'egut', 'MSTRG.12892' => 'ama', 'MSTRG.14325' => 'ama', 'MSTRG.15134' => 'ama', 'MSTRG.25901' => 'ama', 'MSTRG.6818' => 'ama', 'Nitab4.5_0000664g0290' => 'nta', 'Nitab4.5_0001208g0140' => 'nta', 'Nitab4.5_0001567g0100' => 'nta', 'Nitab4.5_0002019g0040' => 'nta', 'Nitab4.5_0002330g0140' => 'nta', 'Nitab4.5_0003076g0040' => 'nta', 'Nitab4.5_0003076g0080' => 'nta', 'Nitab4.5_0003076g0090' => 'nta', 'Nitab4.5_0004959g0050' => 'nta', 'Nitab4.5_0005232g0070' => 'nta', 'Nitab4.5_0006815g0040' => 'nta', 'Nitab4.5_0006955g0020' => 'nta', 'Nitab4.5_0008993g0030' => 'nta', 'Nitab4.5_0009934g0020' => 'nta', 'Nn1g04210' => 'nnu', 'Nn1g06435' => 'nnu', 'Nn1g06436' => 'nnu', 'Nn1g06437' => 'nnu', 'Nn1g06440' => 'nnu', 'Nn3g18082' => 'nnu', 'Nn8g39650' => 'nnu', 'Oeu005400.1' => 'oeu', 'Oeu019300.1' => 'oeu', 'Oeu025361.1' => 'oeu', 'Oeu036077.1' => 'oeu', 'Oeu060627.1' => 'oeu', 'Os01g0238500' => 'osa', 'Os02g0272850' => 'osa', 'Os02g0273100' => 'osa', 'Os02g0302200' => 'osa', 'Os02g0302450' => 'osa', 'Os02g0302700' => 'osa', 'Os02g0306401' => 'osa', 'Os05g0244700' => 'osa', 'Os06g0345200' => 'osa', 'Os11g0552000' => 'osa', 'Os11g0644800' => 'osa', 'Peaxi162Scf00027g00165' => 'pax', 'Peaxi162Scf00059g00920' => 'pax', 'Peaxi162Scf00069g01828' => 'pax', 'Peaxi162Scf00276g00312' => 'pax', 'Peaxi162Scf00845g00027' => 'pax', 'Peaxi162Scf00845g00218' => 'pax', 'Peaxi162Scf00876g10023' => 'pax', 'PGR042G0036' => 'pgr', 'PGR042G0571' => 'pgr', 'PGR042G1054' => 'pgr', 'PGR042G2387' => 'pgr', 'PGR042G2522' => 'pgr', 'PGR044G1242' => 'pgr', 'PGR083G0227' => 'pgr', 'PGR083G2297' => 'pgr', 'PGSC0003DMG400002037' => 'stu', 'PGSC0003DMG400009374' => 'stu', 'PGSC0003DMG400012440' => 'stu', 'PGSC0003DMG400018587' => 'stu', 'PGSC0003DMG400021276' => 'stu', 'PGSC0003DMG400021866' => 'stu', 'PGSC0003DMG400026819' => 'stu', 'PGSC0003DMG400026820' => 'stu', 'Phvul.001G063600' => 'pvu', 'Phvul.005G074400' => 'pvu', 'Phvul.005G101300' => 'pvu', 'Phvul.011G157500' => 'pvu', 'Potri.007G137900' => 'ptr', 'Potri.007G137950' => 'ptr', 'Potri.007G138002' => 'ptr', 'Potri.007G138052' => 'ptr', 'Potri.011G115000' => 'ptr', 'Potri.017G013800' => 'ptr', 'Potri.017G013900' => 'ptr', 'Potri.017G014000' => 'ptr', 'Potri.017G014100' => 'ptr', 'Potri.017G014200' => 'ptr', 'Potri.018G039000' => 'ptr', 'Pp3c22_9790' => 'ppa', 'Pp3c22_9793' => 'ppa', 'Pp3c2_23040' => 'ppa', 'Pp3c4_31240' => 'ppa', 'Pp3c7_15160' => 'ppa', 'PRCOL_00001238' => 'pco', 'PRCOL_00002971' => 'pco', 'PRCOL_00004748' => 'pco', 'PRCOL_00005983' => 'pco', 'Prupe.1G451400' => 'ppe', 'Prupe.3G133000' => 'ppe', 'Prupe.3G133100' => 'ppe', 'Prupe.4G174300' => 'ppe', 'Prupe.4G174400' => 'ppe', 'Psat4g136560' => 'psa', 'Psat5g241800' => 'psa', 'Psat6g035520' => 'psa', 'PSO210G2457' => 'pso', 'PSO210G2566' => 'pso', 'PSO210G2936' => 'pso', 'PSO210G3463' => 'pso', 'PSO210G4798' => 'pso', 'PSO210G7540' => 'pso', 'PSO223G0010' => 'pso', 'PSO223G0024' => 'pso', 'PSO386G0034' => 'pso', 'PSO386G0036' => 'pso', 'PSO478G3259' => 'pso', 'PSO541G4332' => 'pso', 'PSO675G4604' => 'pso', 'PSO675G5786' => 'pso', 'PSO832G0052' => 'pso', 'PSO832G1788' => 'pso', 'QL02p059695' => 'qlo', 'QL02p059702' => 'qlo', 'QL03p041013' => 'qlo', 'QL08p023820' => 'qlo', 'QL08p023827' => 'qlo', 'QL08p039883' => 'qlo', 'QL08p039922' => 'qlo', 'QL08p039939' => 'qlo', 'QL08p039976' => 'qlo', 'QL12p029581' => 'qlo', 'QL93p0206_0022' => 'qlo', 'QL93p0206_0027' => 'qlo', 'RcHm_v2.0_Chr2g0127431' => 'rch', 'RcHm_v2.0_Chr2g0127461' => 'rch', 'RcHm_v2.0_Chr2g0127471' => 'rch', 'RcHm_v2.0_Chr2g0127491' => 'rch', 'RcHm_v2.0_Chr2g0146631' => 'rch', 'RcHm_v2.0_Chr5g0032391' => 'rch', 'RcHm_v2.0_Chr5g0032401' => 'rch', 'RcHm_v2.0_Chr5g0081901' => 'rch', 'RcHm_v2.0_Chr5g0081911' => 'rch', 'RcHm_v2.0_Chr6g0277671' => 'rch', 'RcHm_v2.0_Chr6g0277681' => 'rch', 'RcHm_v2.0_Chr6g0305891' => 'rch', 'Rhsim02G0181200' => 'rsi', 'Rhsim04G0022700' => 'rsi', 'Rhsim04G0070700' => 'rsi', 'Rhsim04G0070800' => 'rsi', 'Rhsim06G0138800' => 'rsi', 'Rhsim06G0202900' => 'rsi', 'Sabra07G0110700' => 'sbr', 'Sabra07G0111200' => 'sbr', 'Sabra11G0100900' => 'sbr', 'Sabra11G0101000' => 'sbr', 'Sabra16G0259400' => 'sbr', 'Sabra17G0011300' => 'sbr', 'Sabra17G0011400' => 'sbr', 'Sabra18G0039100' => 'sbr', 'Sabra19G0029100' => 'sbr', 'SalBow4G1582' => 'sbo', 'SalBow5G5577' => 'sbo', 'SalBow7G0424' => 'sbo', 'SalBow7G1115' => 'sbo', 'SalBow7G1182' => 'sbo', 'SalBow7G1587' => 'sbo', 'SalBow7G2382' => 'sbo', 'SalBow7G2738' => 'sbo', 'SalBow7G3431' => 'sbo', 'SalBow7G4348' => 'sbo', 'SalBow7G4424' => 'sbo', 'SalBow7G4435' => 'sbo', 'Sc03g0010220' => 'sci', 'Sc09g0009220' => 'sci', 'Sc21g0003140' => 'sci', 'Sc21g0003150' => 'sci', 'Sc21g0003170' => 'sci', 'Sed0005521' => 'sed', 'Sed0015754' => 'sed', 'Sed0016625' => 'sed', 'Sed0019799' => 'sed', 'Sed0025370' => 'sed', 'SEGI_01099' => 'sgi', 'SEGI_02550' => 'sgi', 'SEGI_16328' => 'sgi', 'SEGI_21059' => 'sgi', 'SEGI_30150' => 'sgi', 'SEGI_31925' => 'sgi', 'SEGI_33237' => 'sgi', 'SEGI_33259' => 'sgi', 'SGA_v2.0_scaffold185G40050' => 'sas', 'SGA_v2.0_scaffold34G13933' => 'sas', 'SGA_v2.0_scaffold3G01438' => 'sas', 'SGA_v2.0_scaffold70G23690' => 'sas', 'SGA_v2.0_scaffold71G23871' => 'sas', 'SGA_v2.0_scaffold73G24229' => 'sas', 'SHI18651' => 'shi', 'SMO204G0001' => 'smo', 'SMO351G0364' => 'smo', 'Solyc07g053710.3' => 'sly', 'Solyc07g053720.3' => 'sly', 'Solyc07g062810.4' => 'sly', 'Solyc10g007110.3' => 'sly', 'Solyc10g008200.4' => 'sly', 'Solyc11g071280.2' => 'sly', 'Solyc12g088000.2' => 'sly', 'Solyc12g096240.3' => 'sly', 'Sopen07g027680' => 'spe', 'Sopen07g027690' => 'spe', 'Sopen07g031020' => 'spe', 'Sopen10g003010' => 'spe', 'Sopen10g004060' => 'spe', 'Sopen11g028960' => 'spe', 'Sopen12g030030' => 'spe', 'Sopen12g032100' => 'spe', 'Sp3g33850' => 'spa', 'Sp3g33870' => 'spa', 'Sp4g03870' => 'spa', 'Sp4g03900' => 'spa', 'Sp4g03940' => 'spa', 'Sp6g16050' => 'spa', 'Sp6g19540' => 'spa', 'Sp7g06030' => 'spa', 'Sp7g21500' => 'spa', 'Sp7g21510' => 'spa', 'Sp7g21520' => 'spa', 'Sp7g26390' => 'spa', 'Sp7g26400' => 'spa', 'TAR624G0248' => 'tar', 'TAR626G0041' => 'tar', 'TAR626G0287' => 'tar', 'TAR627G0600' => 'tar', 'TAR627G0701' => 'tar', 'THA.LOC104799934' => 'tha', 'THA.LOC104803558' => 'tha', 'THA.LOC104803905' => 'tha', 'THA.LOC104804052' => 'tha', 'THA.LOC104806412' => 'tha', 'THA.LOC104811878' => 'tha', 'THA.LOC104815058' => 'tha', 'THA.LOC104824692' => 'tha', 'THA.LOC104824693' => 'tha', 'Thecc.02G184200' => 'tca', 'Thecc.02G184300' => 'tca', 'Thecc.02G184400' => 'tca', 'Thecc.02G184800' => 'tca', 'Thecc.02G184900' => 'tca', 'Thecc.07G097100' => 'tca', 'Thecc.07G097200' => 'tca', 'Thecc.09G041200' => 'tca', 'Thhalv10000170m.g' => 'esa', 'Thhalv10000482m.g' => 'esa', 'Thhalv10000548m.g' => 'esa', 'Thhalv10000557m.g' => 'esa', 'Thhalv10001981m.g' => 'esa', 'Thhalv10002017m.g' => 'esa', 'Thhalv10004290m.g' => 'esa', 'Thhalv10013642m.g' => 'esa', 'Thhalv10013797m.g' => 'esa', 'Thhalv10025166m.g' => 'esa', 'Thhalv10025195m.g' => 'esa', 'Thhalv10025293m.g' => 'esa', 'Thhalv10025296m.g' => 'esa', 'Thhalv10026801m.g' => 'esa', 'TPR.G20040' => 'tpr', 'TPR.G28173' => 'tpr', 'TPR.G6384' => 'tpr', 'TPR.G7955' => 'tpr', 'TWI23G0520' => 'twi', 'TWI32G0929' => 'twi', 'TWI38G1345' => 'twi', 'TWI39G0413' => 'twi', 'TWI59G0739' => 'twi', 'TWI59G0836' => 'twi', 'unitig_32.g11492' => 'ugi', 'unitig_32.g11493' => 'ugi', 'unitig_37.g12877' => 'ugi', 'unitig_746.g26676' => 'ugi', 'unitig_85.g27408' => 'ugi', 'vmacro09250' => 'vma', 'vmacro09251' => 'vma', 'vmacro09521' => 'vma', 'vmacro11074' => 'vma', 'vmacro11892' => 'vma', 'vmacro12332' => 'vma', 'vmacro12333' => 'vma', 'vmacro23489' => 'vma', 'vmacro23490' => 'vma', 'VMungo0251G0042' => 'vmu', 'VMungo0647G2232' => 'vmu', 'VMungo1080G1053' => 'vmu', 'VMungo1080G1440' => 'vmu', 'VMungo1127G0980' => 'vmu', 'Zm00001eb113920' => 'zma', 'Zm00001eb118930' => 'zma', 'Zm00001eb165890' => 'zma', 'Zm00001eb179360' => 'zma', 'Zm00001eb201770' => 'zma', 'Zm00001eb203230' => 'zma', 'Zm00001eb237500' => 'zma', 'Zm00001eb240650' => 'zma', 'Zm00001eb385390' => 'zma' ) $gf_id = 'HOM05D000658' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000658' ) $data_identifier = 'HOM05D000658' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 44, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 9, 'atr' => (int) 7, 'acertr' => (int) 12, 'cqu' => (int) 13, 'bca' => (int) 37, 'bol' => (int) 25, 'bra' => (int) 20, 'can' => (int) 18, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 7, 'cbr' => (int) 3, 'ccan' => (int) 6, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 9, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 10, 'dzi' => (int) 8, 'eca' => (int) 12, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 20, 'fve' => (int) 5, 'gma' => (int) 11, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 13, 'han' => (int) 10, 'cav' => (int) 9, 'hma' => (int) 4, 'vpl' => (int) 11, 'sun' => (int) 9, 'lal' => (int) 5, 'lonja' => (int) 6, 'lja' => (int) 8, 'lsa' => (int) 14, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 4, 'cme' => (int) 5, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 5, 'osa' => (int) 11, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 4, 'ptr' => (int) 11, 'ppa' => (int) 5, 'pco' => (int) 4, 'ppe' => (int) 5, 'psa' => (int) 3, 'pso' => (int) 16, 'qlo' => (int) 12, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 12, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 13, 'tar' => (int) 5, 'tha' => (int) 9, 'tca' => (int) 8, 'esa' => (int) 14, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 5, 'vma' => (int) 9, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb385390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1